PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF066700160CFD_t1
Common NameTRAES_3BF066700160CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 222aa    MW: 23895.5 Da    PI: 7.0959
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF066700160CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.8e-28128185158
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                              +dDg++WrKYG+K vk+s++ r+YYrC+ +gC vkk++er+++dp++v +tY g Hnh
  TRAES3BF066700160CFD_t1 128 MDDGFRWRKYGKKAVKSSPNLRNYYRCSAEGCGVKKRIERDRDDPRYVLTTYDGVHNH 185
                              59******************************************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-29116187IPR003657WRKY domain
SuperFamilySSF1182901.7E-25120188IPR003657WRKY domain
PROSITE profilePS5081129.516123188IPR003657WRKY domain
SMARTSM007743.4E-31128187IPR003657WRKY domain
PfamPF031063.0E-22129185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAASLGLTSH EACCTVHPTG SSLYNFQADD PFVAAADGAA ELSFPELVEA ARASDYSPLP  60
AFGVAGGETM NMYGRSVVFP MTTSYYCDGA GMFDGDASAR GRWGGIGAMT GRPSGRIGFR  120
TRSEVEVMDD GFRWRKYGKK AVKSSPNLRN YYRCSAEGCG VKKRIERDRD DPRYVLTTYD  180
GVHNHVTPGS TSSRAAPAYS APTAPAWTWS ELHAAAHSSE SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25114188377Probable WRKY transcription factor 4
2lex_A1e-25114188377Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968484.12e-48PREDICTED: probable WRKY transcription factor 58
TrEMBLA0A077RX671e-164A0A077RX67_WHEAT; Uncharacterized protein
STRINGSi002621m5e-48(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.16e-38WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]